How to identify structural variants (SV) breakpoints using alignment PAF file?

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BioInfoBee

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Join Date: Aug 2023

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How to identify structural variants (SV) breakpoints using alignment PAF file?

01-09-2024, 01:53 PM

Hello All,
I have a minimap2 aligned .paf file of two genomes. This paf file was used to identify structural variant (SVs) shared between these genomes. How do I use this paf file alone for a precise detection of SV breakpoints?

Thank you for your time and feedback in advance.

Regards,
B
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