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  • #1

    NGS Data Analysis

    Good day, All!

    Please I need help regarding my DNA-sequence analysis. I have done alignment and variant calling on my DNA sequence, and have my vcf file. I am having problem transposing my vcf file to csv file format to perform some analysis on Rstudio. I will deeply appreciate any expert guidance on this or any resources that could be of help.

    Thank you!
    Tags: alignment, bioinformatics, samtools
  • #2
    Hello, everyone!


    I did a sequence alignment and SNPs analysis, which was successful. However, I wanted to include the frequency of each detected SNP in my data. Please, how can I calculate the frequency of reads that identify each SNP in my data? I would deeply appreciate any good guidance.

    Thank you!

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