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  • primordialsoup77
    Junior Member
    • Jun 2012
    • 3

    Going from 16S to carbon utilization

    Say I have a 16S dataset that has been assigned taxonomic labels and I want to associate the resulting taxa with their carbon inputs and outputs. Is there a standard way to do this, or does anyone have a suggestion for what database I could use to achieve this? Thanks.

    I should mention that my overall goal would be to build a network that models carbon flux through a system.
    Last edited by primordialsoup77; 12-02-2013, 05:50 AM.
  • rhinoceros
    Senior Member
    • Apr 2013
    • 372

    #2
    There's picrust. However, in my opinion 16S to function is not possible. You can have essentially 100% identical 16S sequences from two genomes that nonetheless have over a thousand unique genes each. Due to stuff like this, 16S to function results are IMO garbage.
    savetherhino.org

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    • primordialsoup77
      Junior Member
      • Jun 2012
      • 3

      #3
      That's an interesting tool. Thanks. I think you make a good point. Even applying substantial domain knowledge to the model and supplementing with, for example, biogeochemical data the results would be suggestive at best.

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