can U help with converting a VCF format file to BED ? are there any script ?
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See this thread: http://seqanswers.com/forums/showthread.php?t=9132
Or get BEDOps and use the vcf2bed utility in there: https://github.com/bedops/bedops
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Google is your friend (or any search engine you like): http://www.thegeekstuff.com/2011/10/...not-operators/
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
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