Does anyone know where I can download the hg19 exon and intron coordinates of a particular gene (SPRED1)? Thanks.
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Try UCSC table browser : http://genome.ucsc.edu/cgi-bin/hgTables
direct link :
Make sure it's set to UCSC hg19 refGene
Use these cooordinates : chr15:38,518,952-38,675,550
(i.e. the location of the SPRED1 gene on hg19 )
output ...
#bin name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds score name2 cdsStartStat cdsEndStat exonFrames
879 NM_152594 chr15 + 38545051 38649450 38545386 38643865 7 38545051,38591573,38614441,38616963,38631937,38641622,38643214, 38545418,38591748,38614610,38617010,38632096,38641724,38649450, 0 SPRED1 cmpl cmpl 0,2,0,1,0,0,0,
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