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  • Kezzie
    Junior Member
    • Mar 2014
    • 2

    #1

    Switching file formats

    Does anybody know of a good resource explaining how to convert file formats? I'm interested in mapping a .sra file onto the genome to look for splicing variation, but I don't know how to convert .sra to gtf or something more amenable.
  • dpryan
    Devon Ryan
    • Jul 2011
    • 3478

    #2
    SRA can't be converted to GTF, at least not in any meaningful way. Presumably the SRA file contains reads, so fastq-dump those and then map them.

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    • Kezzie
      Junior Member
      • Mar 2014
      • 2

      #3
      No wonder I was getting nowhere! Thanks, I'll try that.

      Comment

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