Tweet
For any one familiar with RNA-Seq data from TCGA. Are there any control samples included in level3 data. From what I understand from the sample identifier (TCGA-06-0673-11) the last number 11 is for normal tissue and I can't find any samples for RNA-seq.
-
-
Hi Shahenda,
Yes there are a number of normal-adjacent samples available for the RNA-Seq. In fact, you can freely browse and analyze the RNA-SeqV2 (level 3) gene-level data in GenePool by taking advantage of the growing genomics reference library available to everyone. It also includes sample-level metadata curated by folks at Station X to make it easy to find the samples you are interested in analyzing.
Incidentally, we've also included the isoform-, splice-junction-, and exon-level counts in GenePool's premium content.
If you're interested in learning more, please check out GenePool's growing genomics library, check out the following threads:
Please feel free to contact us directly if you have any questions!
------------------------------
GenePool is making genomics data management, analysis, and sharing easier!
Last edited by GenePool; 11-23-2014, 10:42 PM.
-
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...05-06-2024, 07:48 AM -
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...04-22-2024, 07:01 AM
Comment