I have a single BAM file created while merging fastq files for both R1 and R2 for a single cell RNAseq. Now I just want to run GATK to see if some variants can be detected. As far I know GATK needs read group info. But I am not sure is it appropriate in my case! What exactly should I do. Right now I have a single BAM file of unique good quality mapped reads.
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by SEQadmin2
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...-
Channel: Articles
10-14-2026, 09:55 AM -
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Genome Sequencing Reveals Large, Repeat-Rich DNA in Trapdoor Spider Named for Stephen Colbert
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Started by SEQadmin2, 10-28-2026, 09:57 AM
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10-28-2026, 09:57 AM
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Started by SEQadmin2, 10-28-2026, 09:51 AM
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10-28-2026, 09:51 AM
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Started by SEQadmin2, 10-22-2026, 11:13 AM
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10-22-2026, 11:13 AM
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Started by SEQadmin2, 10-22-2026, 10:48 AM
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10-22-2026, 10:48 AM
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