Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • Deepti_angra
    Junior Member
    • Apr 2015
    • 2

    #1

    Trinity not working error

    Hello
    I am trying to use Trinity for ne dove assembly. I have registered for galaxy but when i run his tool for data, I get empty files. Could some body please guide me in the right direction?? What are the other places where I can get Trinity as a software downloaded from??
    Dips
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Hmm .. I would not have thought of galaxy as a place to run trinity (especially if you have a large dataset). What kind of genome (size) are you working with? Are you using trinity with a local galaxy mirror? If so, you may get the best assistance by working with local folks who support your galaxy mirror.

    You can download trinity from their website: http://trinityrnaseq.github.io/ I am going to hazard a guess that you are probably not familiar with command line/linux (since you are using galaxy). This would not be a trivial program to get installed/running for a new comer. Memory requirements for trinity are also high.

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-22-2026, 11:13 AM
    0 responses
    41 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-22-2026, 10:48 AM
    0 responses
    30 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    42 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    45 views
    0 reactions
    Last Post SEQadmin2  
    Working...