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  • pranali
    Junior Member
    • May 2015
    • 1

    Structural Variants

    hi everyone,
    i am currently working with a start up bioinformatics company and my project revolves around Structural Variant analysis..

    i needed to download structural variants sv.vcf files from the databases for breast, ovarian, pancreatic, prostate and other cancers.
    so can any one help me find a public repository where i can find such files?
    immediate help would be highly appreciated
  • prathima
    Junior Member
    • Aug 2016
    • 6

    #2
    Strand NGS for Structural variant analysis

    Detection of Structural Variants in Targeted Sequencing application is possible with Strand NGS software which might be helpful to you.
    Recorded webinar is available at:
    http://www.strand-ngs.com/learn/webinar-recordings

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    • GATTACAT
      Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
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      Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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