Hello I seen a script on this link https://code.google.com/p/fasta-to-fastq/ that converts fasta to fastq either as standalone or unix workflow.
How can use I it either as standalone or unix?
How can use I it either as standalone or unix?
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You can use reformat.sh from BBMap to assign fake Q-scores to a fasta file to convert it to fastq.
Code:$ reformat.sh in=test.fa out=fake.fq qfake=35
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You can download the script from here: https://code.google.com/p/fasta-to-f...ta_to_fastq.pl Use wget or curl with this link: https://fasta-to-fastq.googlecode.co...ta_to_fastq.plOriginally posted by kaps View Post
Add execute permissions to it on serverCode:$ wget https://fasta-to-fastq.googlecode.com/files/fasta_to_fastq.pl
And then run itCode:$ chmod u+x fasta_to_fastq.pl
Code:$ perl fasta_to_fastq.pl reads.fasta > my_converted_fasta.fq
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