Crossbow 1.0.0 help please

[Ben Langmead]

Hi Michael,

Hmmm... Where did you get that version of Crossbow? I didn't release any versions between 0.1.3 and 1.0.4 .

At any rate, please try the latest version (1.0.4) available from the crossbow page:

http://bowtie-bio.sourceforge.net/crossbow/index.shtml

And let me know if there's still a problem,
Ben

[Michael Robinson]

I am very very new with Crossbow and all its tools.

Following Crossbow 1.0.0 manual instructions I installed it and all the required tools. I am running Ubuntu in a 4 gig laptop.

I would like to run it in a single node without Hadoop for the moment.

Per the manual, the following are the commands that I am using and the error that I received.


michael@michael-laptop:~/crossbow_1/crossbow-1.0.0-beta4/example/e_coli$
perl $CROSSBOW_HOME/cb_local.pl -input=small.manifest -preprocess
-pre-output=preproc_small -reference=$CROSSBOW_REFS/e_coli
-output=output_small -cpus=1
Died at /home/michael/crossbow_1/crossbow-1.0.0-beta4/cb_emr.pl line 1290.

Any help will be appreciated.

Michael