Hello,
I am running Trimmomatic command for ChIP-seq data
and getting the following error-
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 1: $'PK\003\004': command not found
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 2: $'\bi\203uH': command not found
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 3: syntax error near unexpected token `$'\a\217\245\234D\312\017\265\026\234\311{\234T\315.\204\024\266ת\353\2179\343\354\003PK\003\004''
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 3:h?uH??\??META-INF/MANIFEST.MFM?=? w???GSS?V;7.ƕ?ҧ?h??{????F??N???R< ???>??~A?$??-U?ِ+???????i?}M??i@?F???;?????zC?K?X]?L?=g#?(???D????{?T?.??ת?9??PK'
Can someone please help me?
Thank you
I am running Trimmomatic command for ChIP-seq data
Code:
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar SE -phred33 /home/bsharmi6/data/Egr1_rep1.ChIP-Seq.R1.fastq /home/bsharmi6/data/Egr1_rep1.ChIP-Seq.R1.output.fastq ILLUMINACLIP:/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/adapters/TruSeq3-SE.fa:2:30:10 LEADING:10 TRAILING:10 SLIDINGWINDOW:4:15 MINLEN:36
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 1: $'PK\003\004': command not found
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 2: $'\bi\203uH': command not found
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 3: syntax error near unexpected token `$'\a\217\245\234D\312\017\265\026\234\311{\234T\315.\204\024\266ת\353\2179\343\354\003PK\003\004''
/home/bsharmi6/ChIPseqTools/Trimmomatic-0.36/trimmomatic-0.36.jar: line 3:h?uH??\??META-INF/MANIFEST.MFM?=? w???GSS?V;7.ƕ?ҧ?h??{????F??N???R< ???>??~A?$??-U?ِ+???????i?}M??i@?F???;?????zC?K?X]?L?=g#?(???D????{?T?.??ת?9??PK'
Can someone please help me?
Thank you
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