Hello all,
I just joined a clinical sequencing team focusing mainly on oncology and they are rethinking their NGS platform approach. We have a bit of everything machine-wise but I wanted to know what people on this forum have been using in terms of workflow management tool? I am trying to find the best way to integrate all the equipment together (across vendors or at least within 1 vendor) to manage our high volume goals and any help wrapping my head around what's available would be super useful!
I saw some references around Galaxy but the post was old so I wanted to know what the current approach was? Are the workflow / LIMS commercial solutions any good (Thermo, Illumina, etc.) or is an open software approach still the way to go?
Thanks a ton for your help! Let me know if you want any details that might help!
I just joined a clinical sequencing team focusing mainly on oncology and they are rethinking their NGS platform approach. We have a bit of everything machine-wise but I wanted to know what people on this forum have been using in terms of workflow management tool? I am trying to find the best way to integrate all the equipment together (across vendors or at least within 1 vendor) to manage our high volume goals and any help wrapping my head around what's available would be super useful!
I saw some references around Galaxy but the post was old so I wanted to know what the current approach was? Are the workflow / LIMS commercial solutions any good (Thermo, Illumina, etc.) or is an open software approach still the way to go?
Thanks a ton for your help! Let me know if you want any details that might help!
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