Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • Celestic
    Junior Member
    • Oct 2018
    • 2

    Need help reading this data

    Hi I am a computer science graduate student and need help reading some data for this bioinformatics research I am helping out on. I have a few hundred text files containing the following sample information:

    Geno SNP_A-8343733 NA
    Geno SNP_A-8338245 1
    Geno SNP_A-8338251 NA
    Geno SNP_A-8338258 0
    Geno SNP_A-8344803 1
    Geno SNP_A-8349310 1

    I want to know how to read this data and what kind of data is this? I am new to Biology and Bioinformatics in general so any help would be greatly appreciated!
  • Richard Finney
    Senior Member
    • Feb 2009
    • 701

    #2
    check out "affymetrix array snp calling" output formats and codes

    SNP_A* are snp ids (which map to dbSNPS's rsIDS)

    The code is probably ...
    0=AA (homozygous for the reference allele)
    1=AB (heterozybous)
    2=BB (homozygous for the alternative allele)

    but make sure.

    Comment

    • Celestic
      Junior Member
      • Oct 2018
      • 2

      #3
      Okay thank you. I found out that it is affymetrix array snp calling 6.0 but not sure what I can do with this data exactly?

      Comment

      Latest Articles

      Collapse

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 06-05-2026, 10:09 AM
      0 responses
      14 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-04-2026, 08:59 AM
      0 responses
      24 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-02-2026, 12:03 PM
      0 responses
      31 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-02-2026, 11:40 AM
      0 responses
      23 views
      0 reactions
      Last Post SEQadmin2  
      Working...