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  • fahmida
    Member
    • Aug 2010
    • 54
    #1

    Downloading all mouse genes and up/downstream seuences

    Hi Everyone,

    I am not sure if the question fits here.
    I want to download all the known genes of Mouse with 5000bp upstream and downstream sequences.
    Is there any particular databases or any programs/scripts that can do that for me?
    Thanks a lot for any help.

    Regards.
    Tags: None
    • Linnea
      Member
      • Mar 2010
      • 23
      #2
      Check out Ensembl BioMart:

      http://www.ensembl.org/biomart/martv...5a6b8d132e9d21

      You can choose if you want coding sequence, exons, cDNA, flanking regions etc. Then just click on results Can take up to some hours, but no scripting is needed!

        Comment

        • pbluescript
          Senior Member
          • Nov 2009
          • 224
          #3
          The UCSC Table Browser also works well for this purpose.

            Comment

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