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  • Louis_Lemire
    Junior Member
    • Jun 2011
    • 5

    #1

    Greetings from AL - working with Avian Retina Transcriptome

    Greetings SEQ community -

    I don't recall ever being a newbie in any forum in the recent past but I must say that is the case here.

    I will be working with an Illumina transcriptome derived from the retinal/RPE tissue of Gallus gallus and will be starting from scratch - just now working out the details to obtain a computer with enough memory, etc.

    I think I may start with ngs_backbone to clean up my reads when I receive them shortly from Emory Univ in GA. Luckily I'll have the Gallus gallus genome in my favor which is decently annotated and nearly complete.

    Mostly I will be reading threads and trying to learn from them but should I run into a roadblock I'll certainly post for help.

    I am looking forward to learning a lot on this forum and I thank those of you who help others to learn NGS techniques in advance - you guys are fulfilling a role that may allow me in the future to help others as well.

    Also in my favor is a decently annotated Contig library from the retinal tissue of Gallus and I hope to take advantage of that as well.

    Right now I am learning the basics of Linux.

    Thanks for being here and helping.

    Louis Lemire
    Ft. White, FL
    Research Collaborator
    Dept. of Biological Sciences
    Auburn University
    Auburn, AL

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