RNAseq with solid fasq.

[dknguyen]

Hi everyone, I am new at Galaxy website as well as NGS. My primary work is to analyze gene expression using RNA-seq. I downloaded fasq files from ENAa, uploaded them into galaxy using ftp, mapped them using bowtie for solid and this is where I got lost.

HOW do I get fpkm or rpkm from these files? Please help

Thank you very much
Di Nguyen, postdoc
U of Washington, WA