de Bruijn graphs

[ranjani]

i am new to this concept pls any one tell me the book that helps in understanding de Bruijn graphs used in de novo assembly.[email protected]

[cement_head]

i am new to this concept pls any one tell me the book that helps in understanding de Bruijn graphs used in de novo assembly.[email protected]

Hi,

There is a very good & clear explanation in the CLC Genomics Workbench Manual ( http://www.clcbio.com/files/usermanu...ser_Manual.pdf ).

See Pages 464 ~ 473.

- CH

[GenoMax]

Nature biotechnology has a good article: http://www.nature.com/nbt/journal/v2.../nbt.2023.html

If you do not have access to an online subscription then here is the reference : Nature Biotechnology, Vol 29, 987–991 (2011)

[ranjani]

thank u...

[HESmith]

Samanta's blog has a nice series of entries explaining de Bruijn graphs (starting here).

[samanta]

I compiled those earlier commentaries on de Bruijn graphs with additional materials in the form of easily accessible tutorials -

http://homolog.us/Tutorials