Finding amino acid from a position in the human genome

[BAMseek]

Glad that helps. The default page is hg18, so be sure to go to the hg19 link

[kwatts59]

Thanks Justin. SeattleSeq was exactly what I needed.

[BAMseek]

You might want to look at ANNOVAR (command line tool) or SeattleSeq (web tool). Both of those should do what you are looking for.

Justin

[kwatts59]

To all,
I have a database of SNPs and with the chromosome and location in the human genome.
For example, in human genome GRCh37/hg19, on Chromosome 1, position 1118275, in gene TTLL10, the nucleotide is a "C" (cytosine).

If I mutate that C to a T (thymine), what amino acid would change in the TTLL10 gene?

I have 33,162 of these SNPs, so I cant do this one at a time.

Thanks in advance.