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You might want to look at ANNOVAR (command line tool) or SeattleSeq (web tool). Both of those should do what you are looking for.
JustinLeave a comment:
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Finding amino acid from a position in the human genome
To all,
I have a database of SNPs and with the chromosome and location in the human genome.
For example, in human genome GRCh37/hg19, on Chromosome 1, position 1118275, in gene TTLL10, the nucleotide is a "C" (cytosine).
If I mutate that C to a T (thymine), what amino acid would change in the TTLL10 gene?
I have 33,162 of these SNPs, so I cant do this one at a time.
Thanks in advance.
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Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...09-07-2023, 11:15 PM
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