Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • sarbashis
    Member
    • Jun 2010
    • 17

    #1

    UCSC browser tract problem

    Dear All,
    I have generated wig file using igvtools of the alignment and I want to upload wig file to ucsc browser. I have added tract information at the begining of the line. File can upload successfully but in browser showing "no data" on the left panel. Any suggestion is highly appreciated. Few lines of the tract are given below

    track type=wiggle_0
    variableStep chrom=chr10 span=100
    3000001 1.65
    3000101 2.12
    3000201 2.53
    3000301 2.68
    3000401 1.02
    3000501 0.55
    3000601 3.06
    3000701 3.98
    3000801 3.01
    3000901 1.6
    3001001 1.66
    3001101 3.14
    3001201 2.86
    3001301 1.48
    3001401 4.6
    3001501 2.69
    3001601 0.37
    3001801 0.5
    3001901 1.37
    3002001 3.76
    3002101 2.91
    3002201 1.86
    3002301 1.5
    3002401 1.24
    3002501 3.41
    3002601 3.0
    3002701 1.0
    3002801 2.51
    3002901 0.44
    3003001 1.0
    3003101 0.06
    3003201 2.14
    3003301 1.72
    3003401 2.08
    3003501 1.58
    3003601 1.45
    3003701 1.05
    3003801 1.42
    3003901 0.95
    3004001 2.46
    3004101 2.09
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    What do you mean no data on the left panel? I took a few lines from your example (you do not say what genome this is) and they display ok at UCSC.
    Attached Files

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-22-2026, 11:13 AM
    0 responses
    27 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-22-2026, 10:48 AM
    0 responses
    20 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    36 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    44 views
    0 reactions
    Last Post SEQadmin2  
    Working...