Hello from cocomilk

[cocomilk]

Hi, everyone,
I'm located in Indiana, U.S.A. My project in the coming year will be chip-seq. I'm looking forward to benefit from and contribute to this forum. This is a great forum

[apfejes]

Hi Cocomilk,

Welcome to seqanswers!

What aspect of chip-seq will you be working on?

[cocomilk]

Thank you apfejes!

I'm interested in finding out all sequences that interact with one steroid hormone receptor protein. So I'm most interested in CHIP-SEQ. My work is more on wet bench side, but I'm very interested in the bioinformatics research.

BTW, we do not have a illumina machine on campus (though we do have a SOLID), so we are going to use service from bcgsc.

You are located in Vancouver, are you from bcgsc?

Hi Cocomilk,

Welcome to seqanswers!

What aspect of chip-seq will you be working on?

[cocomilk]

Oh, apfejes, I checked your page and found that you are from bcgsc. And you are a bioinformatics scientist! That's pretty great! I'm going to read your paper about findpeak3.1 and try to understand any much as possible.

[apfejes]

hi cocomilk,

That's cool - so you'll be working more on the "data interpretation" side of the ChIP-Seq, then. Good luck with the experiment!

Yes, I am at the BC GSC. I work mainly on the software development side of things when it comes to ChIP-seq.

Anthony

[apfejes]

The fp3.1 paper is just an application note and is very light on details. If you will be using the FindPeaks software, you're probably better off reading the PDF manual that comes with the package, available on the BCGSC web page.

Cheers!

Anthony

[cocomilk]

Thanks! Got it

Yeah, I was expecting a long paper and only see two pages. I'll check the manual as you mentioned. I may have some stupid questions in the future.
Thanks a lot!