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Hello from Michigan
Hi,
My name ist Marco and I am working as a postdoc at Michigan State University.
I am particularly interested in assembling a transcriptome from Solexa and 454 reads and getting expression analysis from the same RNA-seq experiment.
Unfortunately I am not a computer scientist just a biologist working with a non-model organism but since our bioinformatic specialists are completely overwhelmed with the created data I try to do as many analysis as possible on my own. This is on the one hand exciting (I really start liking the computer work) but also sometimes pretty difficult especially if it comes to tasks which are for most of you pretty simple like parsing an output file. I would really appreciate any help and I am more than happy to share any experience I make on the way.
Thanks,
Marco
My name ist Marco and I am working as a postdoc at Michigan State University.
I am particularly interested in assembling a transcriptome from Solexa and 454 reads and getting expression analysis from the same RNA-seq experiment.
Unfortunately I am not a computer scientist just a biologist working with a non-model organism but since our bioinformatic specialists are completely overwhelmed with the created data I try to do as many analysis as possible on my own. This is on the one hand exciting (I really start liking the computer work) but also sometimes pretty difficult especially if it comes to tasks which are for most of you pretty simple like parsing an output file. I would really appreciate any help and I am more than happy to share any experience I make on the way.
Thanks,
Marco