Dear All,
Just wanted to say a big Hello and thanks to the community which has served its purpose well for so long. If it hadn't been for this community, I wouldn't have learned the basic things of genomics before jumping on to the more specialised articles.
I'm currently working on establishing a RNA-seq analysis using bcbio; my main issue being selection of an aligner. I have been looking into STAR, HISAT2 (successor of Bowtie,Bowtie2), SNAPR, Rsubread and TopHat. Currently, there aren't any analysis-specific requirements.
Any thoughts?
Cheers,
Sandeep
Just wanted to say a big Hello and thanks to the community which has served its purpose well for so long. If it hadn't been for this community, I wouldn't have learned the basic things of genomics before jumping on to the more specialised articles.
I'm currently working on establishing a RNA-seq analysis using bcbio; my main issue being selection of an aligner. I have been looking into STAR, HISAT2 (successor of Bowtie,Bowtie2), SNAPR, Rsubread and TopHat. Currently, there aren't any analysis-specific requirements.
Any thoughts?
Cheers,
Sandeep
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