Hello everyone,
I'm analysing ChIP-Seq and RNA-Seq data obtained from a solexa platform (and possibly 454 in the future for de-novo assemblies). I'm familiar with R and use it for these analyses. I'm currently comparing alignments generated by maq and bowtie (and plan to extend this comparison with the Biostring R package pairwiseAlignment function).
I'm analysing ChIP-Seq and RNA-Seq data obtained from a solexa platform (and possibly 454 in the future for de-novo assemblies). I'm familiar with R and use it for these analyses. I'm currently comparing alignments generated by maq and bowtie (and plan to extend this comparison with the Biostring R package pairwiseAlignment function).
