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  • Lv Ray
    Member
    • Jun 2014
    • 42
    #1

    How to get SNP array data ?

    Hi ,dears.
    I want to download some SNPs Array data. Such as a paper , they genotyped some samples by Illumina Porcine 60KSNPs array, I want get the raw data(before their genotyping ) if these data are public. Is any database to store them? How about Ensemble...
    Tags: snp arrays
  • mbblack
    Senior Member
    • Aug 2009
    • 245
    #2
    Why not just contact one of the authors of the paper, and ask them? Their contact information should be on the publication, or easily found with a web search.

    There are numerous public SNP databases, so its impossible to tell you which one some particular unknown publication's data may be in.
    Michael Black, Ph.D.
    ScitoVation LLC. RTP, N.C.

    Comment

    • Richard Finney
      Senior Member
      • Feb 2009
      • 701
      #3
      Check NCBI Geo ...

      GEO Accession viewer
      http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL11379
      NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.


      They might have some raw data, but be careful sometimes it's processed.

      This one claims some raw data ...
      GEO Accession viewer
      http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26436
      NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.

      Supplementary file Size Download File type/resource
      GSE26436_raw_data.txt.gz 1.3 Mb (ftp)(http) TXT
      GSE26436_summary.xls.gz 7.0 Mb (ftp)(http) XLS
      Last edited by Richard Finney; 07-10-2014, 09:40 AM.

      Comment

      • Lv Ray
        Member
        • Jun 2014
        • 42
        #4
        Thank you!I will be careful to process them!

        Comment

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