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This looks cool but it is too bad you have to sign up. Would be nice if they offered a download to analyze data locally... -
Making this Sticky, hope no one minds. I have had a lot fun playing with OpenSNP and my data. Any plans on supporting Exome data from 23andMe (or WGS from others)?Leave a comment:
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New open software tool for 23andme and Decodeme results
New open software tool for 23andme and Decodeme results.
OpenSNP has won Mendeley and the Public Library of Science's Binary Battle that set the challenge of making research more open using those companies' tools, and will receive the grand prize of $10,001. The openSNP tool allows customers of some direct-to-consumer genetic testing companies to upload their raw results, share them, and learn about their variants from the literature. Researchers can also use the shared data. Developer Bastian Greshake, a master's degree student at Goethe University, came up with the idea for openSNP after he was genotyped, the Nature News Blog notes.
The runners up are PaperCritic and rOpenSci.
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In the first segment of our review of epigenetic sequencing methods, we covered methylation detection, chromatin accessibility, and protein-DNA interactions. This final part of our review will break outside of the standard analysis and cover some influential multidimensional methods.
Spatial Epigenomics
“Epigenetic assays, whether conducted at the single-cell or bulk level, have played a crucial role in unraveling the underlying mechanisms of diseases and...Today, 06:48 AM -
Developments in sequencing technologies and methodologies have transformed the field of epigenetics, giving researchers a better way to understand the complex world of gene regulation and heritable modifications. This article explores some of the diverse sequencing methods employed in the study of epigenetics, ranging from classic techniques to cutting-edge innovations while providing a brief overview of their processes, applications, and advances.
Methylation Detect...05-31-2023, 10:46 AM -
Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis
After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM
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