Hi All,
I have illumina genomic sequencing data of a bacteria. When I aligned with bowtie only 1% aligned but using BWA (gap aligned) 76% aligned. The alignment showing lots of 1 nucleotide gaps on almost every 100 bp distance. Any suggestion what actually happening and how I handle this. Thank in advance
I have illumina genomic sequencing data of a bacteria. When I aligned with bowtie only 1% aligned but using BWA (gap aligned) 76% aligned. The alignment showing lots of 1 nucleotide gaps on almost every 100 bp distance. Any suggestion what actually happening and how I handle this. Thank in advance
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