Hi, I'm having trouble indexing my genome. Here is the command I am using:
bwa index -a bwtsw /data/Bioinfo/genomes/hg18.fa
Here is the error:
[bwa_index] Pack FASTA... [bns_fasta2bntseq] fail to open file '/data/Bioinfo/genomes/hg18.fa.pac'. Abort!
Aborted
I have all the various hg18.fa files in the same directory as well:
hg18.fa
hg18.pac
hg18.ann
hg18.amb
hg18.rpac
hg18.bwt
hg18.rbwt
hg18.sa
hg18.rsa
I don't know what I'm doing wrong. Any suggestions would be appreciated! Thanks!
bwa index -a bwtsw /data/Bioinfo/genomes/hg18.fa
Here is the error:
[bwa_index] Pack FASTA... [bns_fasta2bntseq] fail to open file '/data/Bioinfo/genomes/hg18.fa.pac'. Abort!
Aborted
I have all the various hg18.fa files in the same directory as well:
hg18.fa
hg18.pac
hg18.ann
hg18.amb
hg18.rpac
hg18.bwt
hg18.rbwt
hg18.sa
hg18.rsa
I don't know what I'm doing wrong. Any suggestions would be appreciated! Thanks!
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