Hello,
my question is, how to determine the format of quality scores for bases in .bam format, i.e. is it ASCII-32 or ASCII-64? I know that some files where aligned by bwa with -I flag, some not. So I wonder if somebody knows a quick way to determine if it's 32 or 64 and how to convert .bam files between them.
Many thanks upfront!
my question is, how to determine the format of quality scores for bases in .bam format, i.e. is it ASCII-32 or ASCII-64? I know that some files where aligned by bwa with -I flag, some not. So I wonder if somebody knows a quick way to determine if it's 32 or 64 and how to convert .bam files between them.
Many thanks upfront!
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