How can I get a test dataset for OLB 1.9? I realize they are huge, but we need one (with config.xml, filter/bcl/txt files...the works). Can NOT get setupBclToQseq.py to run.
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Can't help with the dataset, but we also had a problem with setupBclToQseq. In our case the problem appeared to be that we tried to run GERALD before having done the qseq conversion. This obviously failed, but also seemed to change something which then made setupBclToQseq fail (it just sat in an infinite loop writing out the same config files over and over again).
We spent a while troubleshooting this with Illumina tech support but in the end we gave up and reprocessed from intensities.
If your problem is similar and you get to the bottom of it I'd be interested to hear what it was.
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Originally posted by simonandrews View PostCan't help with the dataset, but we also had a problem with setupBclToQseq. In our case the problem appeared to be that we tried to run GERALD before having done the qseq conversion. This obviously failed, but also seemed to change something which then made setupBclToQseq fail (it just sat in an infinite loop writing out the same config files over and over again).
We spent a while troubleshooting this with Illumina tech support but in the end we gave up and reprocessed from intensities.
If your problem is similar and you get to the bottom of it I'd be interested to hear what it was.
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Hi Hillary,
Thank you for such a prompt answer. I would actually would like to use OLB for image analysis - if I understand correctly, the image analysis functionality is still there, using it is just deprecated. Therefore, CASAVA would not solve our problems. Anyway, it would be nice to have a complete HiSeq test data set available.
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