Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Time to run variant caller plugin for Ion Torrent

    I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
    Thank you!

  • #2
    The PGM doesn't have a 10G chip.

    Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller).
    @bioinformer
    http://www.linkedin.com/in/jonathanjacobs

    Comment


    • #3
      Torrent Suite for Mac

      I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Latest Developments in Precision Medicine
        by seqadmin



        Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

        Somatic Genomics
        “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
        05-24-2024, 01:16 PM
      • seqadmin
        Recent Advances in Sequencing Analysis Tools
        by seqadmin


        The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
        05-06-2024, 07:48 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 06:55 AM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 05-30-2024, 03:16 PM
      0 responses
      23 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 05-29-2024, 01:32 PM
      0 responses
      27 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 05-24-2024, 07:15 AM
      0 responses
      214 views
      0 likes
      Last Post seqadmin  
      Working...
      X