Hi all,
I was just going through the files Complete Genomics is providing as deliverables by their Cancer sequencing service.
I downloaded the data from:
ftp://ftp2.completegenomics.com/Canc...2.0.0/HCC2218/
There are two folders - one for normal and one for tumor sample. When I unzip them - I looked at the evidence folder (GS00258-DNA_A03/ASM/EVIDENCE). I found evidenceDnb files for chromosomes 2,5,6,13 and M only. For the same set of chromosomes, we also have evidence Interval files.
Following is my doubt:
1) The remaining chromosomes have only evidence interval files and no evidence Dnb files. Why is it so? What does it mean?
2) According to the CGA tools userguide, evidence Dnb files are to be converted to SAM format. Does this mean that evidence interval files are not meant to be used for this conversion?
Please guide. Thanks in advance.
I was just going through the files Complete Genomics is providing as deliverables by their Cancer sequencing service.
I downloaded the data from:
ftp://ftp2.completegenomics.com/Canc...2.0.0/HCC2218/
There are two folders - one for normal and one for tumor sample. When I unzip them - I looked at the evidence folder (GS00258-DNA_A03/ASM/EVIDENCE). I found evidenceDnb files for chromosomes 2,5,6,13 and M only. For the same set of chromosomes, we also have evidence Interval files.
Following is my doubt:
1) The remaining chromosomes have only evidence interval files and no evidence Dnb files. Why is it so? What does it mean?
2) According to the CGA tools userguide, evidence Dnb files are to be converted to SAM format. Does this mean that evidence interval files are not meant to be used for this conversion?
Please guide. Thanks in advance.
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