which novoalign is just a test to see if you set up the path correctly.
All you really need is PATH=/directory...:$PATH
Do you have a copy of novoalign?
All you really need is PATH=/directory...:$PATH
Do you have a copy of novoalign?
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===convertNAV SR.aa.cps.nav:=== Traceback (most recent call last): File "/data4/experpath/vasm/vasm/NextGen/setoc/Programs/LSC/LSC_023/convertNAV.py", line 49, in <module> Traceback (most recent call last): Traceback (most recent call last): File "/data4/experpath/vasm/vasm/NextGen/setoc/Programs/LSC/LSC_023/convertNAV.py", line 49, in <module> Traceback (most recent call last): File "/data4/experpath/vasm/vasm/NextGen/setoc/Programs/LSC/LSC_023/convertNAV.py", line 49, in <module> File "/data4/experpath/vasm/vasm/NextGen/setoc/Programs/LSC/LSC_023/convertNAV.py", line 49, in <module> start_pt = int(line_list[3]) start_pt = int(line_list[3]) IndexError: list index out of range IndexError: list index out of range start_pt = int(line_list[3]) start_pt = int(line_list[3]) IndexErrorIndexError: : list index out of rangelist index out of range
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