[zhoufan]

Hi rhall,
Thanks ! It works after i changed the OS.

[oakeley]

Exiting smrtpipe last error: time data

Dear all,
I just spent a few hours trying to figure out why jobs on my test install of smrtpipe failed immediately (everything looked OK). Google gave me nothing do I am posting here to help anyone who gets an error like this:
"Exiting smrtpipe last error: time data 'Sam Jan 18 10:47:32 UTC 2014' does not match"

My Linux box is set up with German (Swiss) for the language for no good reason except that I live in Switzerland...

If you do this then the date settings are in German (Sam = Samstag = Saturday)

The smrtpipe will only run if you change (system wide) your language settings to US English. Do a reboot just to be sure and then you are good to go.

Kind of annoying but now you know.

Good luck and have fun

Edward

[rhall]

Edward,
What version of SMRT Analysis are you using? This is a known bug, but I thought it was fixed.

[madhubioinfo]

am trying to use smrt in my SGE cluster after installing am trying to run smrtpipe.py am getting the following error Traceback (most recent call last):
File "/share/apps/smrtanalysis/install/smrtanalysis_2.3.0.140936/analysis/bin/ smrtpipe.py", line 11, in
from SMRTpipe.SmrtPipeMain import SmrtPipeMain, _sanityCheck
ImportError: No module named SMRTpipe.SmrtPipeMain

[jkaralius]

am trying to use smrt in my SGE cluster after installing am trying to run smrtpipe.py am getting the following error Traceback (most recent call last):
File "/share/apps/smrtanalysis/install/smrtanalysis_2.3.0.140936/analysis/bin/ smrtpipe.py", line 11, in
from SMRTpipe.SmrtPipeMain import SmrtPipeMain, _sanityCheck
ImportError: No module named SMRTpipe.SmrtPipeMain

This question is covered in GitHub:

https://github.com/PacificBiosciences/SMRT-Analysis/issues/171