Hi,
I am trying to install SMRTanalysis package from pacbio on SUSE Linux server.
Then run the command '/smartanalysis/analysis/bin/smrtpipe.py' and got an error message as below:
Traceback (most recent call last):
File "/data1/smartanalysis/analysis/bin/smrtpipe.py", line 4, in <module>
import pkg_resources
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 2803, in <module>
working_set.require(__requires__)
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 696, in require
needed = self.resolve(parse_requirements(requirements))
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 594, in resolve
raise DistributionNotFound(req)
pkg_resources.DistributionNotFound: pbpy==0.1
Its some errors related to python. The current python path its searching for is (/usr/local/python2.7/) which is our local python install. I know SMRTanalysis have python bundled under folder (smartanalysis/analysis/lib/python2.7). But it always search in local python directory and throws error.
I have setup the path for "SEYMOUR_HOME" in setup.sh. Any suggestions regarding this?
I am trying to install SMRTanalysis package from pacbio on SUSE Linux server.
- Edited the setup script (/opt/smrtanalysis-1.4.0/etc/setup.sh) to match our installation location.
- Performed fresh installation with configure_smrtanalysis.sh
Then run the command '/smartanalysis/analysis/bin/smrtpipe.py' and got an error message as below:
Traceback (most recent call last):
File "/data1/smartanalysis/analysis/bin/smrtpipe.py", line 4, in <module>
import pkg_resources
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 2803, in <module>
working_set.require(__requires__)
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 696, in require
needed = self.resolve(parse_requirements(requirements))
File "/usr/local/python2.7/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/pkg_resources.py", line 594, in resolve
raise DistributionNotFound(req)
pkg_resources.DistributionNotFound: pbpy==0.1
Its some errors related to python. The current python path its searching for is (/usr/local/python2.7/) which is our local python install. I know SMRTanalysis have python bundled under folder (smartanalysis/analysis/lib/python2.7). But it always search in local python directory and throws error.
I have setup the path for "SEYMOUR_HOME" in setup.sh. Any suggestions regarding this?
Comment