PBJelly keeps crashing on me. Previous jobs (with potentially poor Illumina assemblies) produced poor results. That said I do have a current job that has been running for three days without crashing so I am hoping for the best. That job is a small variant on jobs that have crashed on me but maybe I got everything right this time. As is typical for bioinformatics program the troubleshooting messages are not very helpful.
I do realize that PBJelly is newer than AHA but one has to do with what actually runs.
Looks like you just removed the AHA option from the web page I posted above. Your first edit of that page.
While I haven't used MaSrRCA in a while it seems to me that it is basically doing an Illumina assembly and then layering -- scaffolding, gap-filling, whatever -- on top of the Illumina assembly. Same category
I point out that while PacBio only assembly is nice it doesn't really work for a 1GB genome unless one has a lot of $$$.
I do realize that PBJelly is newer than AHA but one has to do with what actually runs.
Looks like you just removed the AHA option from the web page I posted above. Your first edit of that page.
While I haven't used MaSrRCA in a while it seems to me that it is basically doing an Illumina assembly and then layering -- scaffolding, gap-filling, whatever -- on top of the Illumina assembly. Same category
I point out that while PacBio only assembly is nice it doesn't really work for a 1GB genome unless one has a lot of $$$.
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