Hello,
I need to run Quiver on a large set of *.cmp.h5 files, and so I would like to access the main module from a Python script. I think I might do this similar to how I accessed the CmpH5Select.py module, like this example:
So I really have two questions: which function in which file can be used to access Quiver (for example, variantcaller.py)? And how should I pass parameters to it?
I need to run Quiver on a large set of *.cmp.h5 files, and so I would like to access the main module from a Python script. I think I might do this similar to how I accessed the CmpH5Select.py module, like this example:
Code:
sys.path.append('/smrtanalysis/install/smrtanalysis_2.3.0.140936/analysis/lib/python2.7') import pbh5tools.CmpH5Select as select ... select.cmpH5Select(inputfile, None, idxs = None, groupByStr = "Movie", groupByCsv = None, whereStr = None, outDir = moviedir)
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