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  • sci_guy
    replied
    Nice one

    Originally posted by fnielsen View Post
    The good thing about this list is that it features a description of each package, and since it is a Wiki it has a chance of staying up-to-date.
    I find the fact the thread is helping a populate a wiki amusing considering the thread was born out of a wiki I maintain for my organisation.

    Leave a comment:


  • zee
    replied
    It's good to see articles like this, especially since the technology platforms are in such a state of flux. The authors dont claim a complete list and Seqanswers probably have the most comprehensive listing I've seen so far.

    Congrats are in order

    Leave a comment:


  • ECO
    replied
    Originally posted by fnielsen View Post
    SEQanswers was also used to compile this list from NBIC (Netherlands Bioinformatics Centre):



    The good thing about this list is that it features a description of each package, and since it is a Wiki it has a chance of staying up-to-date.
    Nice site.

    You have a problem with your site certificate (not sure why you're specifying https) which prevents the site from loading properly for firefox users.

    Also, you're missing ABI as a next gen seq provider.

    Leave a comment:


  • fnielsen
    replied
    List of Seq tools

    SEQanswers was also used to compile this list from NBIC (Netherlands Bioinformatics Centre):



    The good thing about this list is that it features a description of each package, and since it is a Wiki it has a chance of staying up-to-date.

    Leave a comment:


  • B_T
    replied
    Congratulations!!

    BT

    Leave a comment:


  • SEQanswers used as a reference in Nature Biotech paper!

    Thought this was a worthy milestone in SEQanswers' existence. While reading the next-gen focus in this issue of Nature Biotech, I came across the following table summarizing software packages:



    ...note small print.

    We're official people! Many thanks again to sci_guy and everyone else who contributed to the epic bioinformatics tools thread referenced above!

    Thanks also to Jay Shendure and Hanlee Ji for stopping by. Would love to see you both post!

Latest Articles

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  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2




    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
    Yesterday, 06:46 AM
  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
    ...
    10-14-2026, 09:55 AM

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