Hi all,
This may be a very elementary question, but does anyone know how/where I can access the data for just the ASW population that seems...
17 results in 0.0035 seconds.
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ASW from AFR population in 1000 genomes
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1000 genomes phase 3 reference
Does anyone know what reference data they used for alignement in phase 3, 20130502 release?
Browsing through their ftp I have only found phase... -
Tabix for 1000 genomes
Hi.
I'm trying to use tabix for downloading variants from specific genomic regions, from the recently submitted phase 3 1000 genomes vcf files,... -
1000 genomes VCFs in GATK
Hello,
I have used the 1000 genomes data slicer tool to generate a vcf file which I would like to combine with one of my own. However, when I use... -
1000 genomes and depth of coverage
Hi all,
I am interested in obtaining information regarding the depth of coverage for specific regions of the genome from the 1000 genomes... -
Easiest way to determine copy number for all SVs in all samples in 1000 Genomes
Hello SEQanswers community,
I was wondering if there is a PLINK file available that has the copy number status of all structural variants... -
1k genomes and VCF: slow processing of individual genome
Hi all,
I'm currently having troubles extracting a single genome's VCF file from the 1000 genomes repository. Theoretically using tabix and vcftools... -
1000 genomes human reference
Hello,
I'm using hg19.
As you may know when you perform variant calling, reference variation allele may be biased due to... -
1000 genomes RNA-seq datasets
Hi all,
Would anyone know where I would be able to find RNA-seq data from the chinese 1000 genomes populations. I know of the recent nature paper... -
How to convert to or get 1000 Genomes phase1 data mapped to hg18.
Hello.
I'm trying to annotate my variant data with 1000 genomes phase1 data.
(ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf)... -
Seeking advice for Amazon Web Services usage
I have been searching for some specific sequences in the 1000 Genomes Project data, using samtools view and BreakSeq, until the IT services in my University... -
Ancestral alleles from 1000 Genomes Project
Hi all,
I'm looking for ancestral alleles for Build 37 of the human genome, and was pointed to the 1000 Genomes site here:
ftp... -
Reference that matches vcf?
I recently downloaded the reference (hg19) chromosome 10 fasta file from UCSC, and naively assumed that this reference would match the reference alleles... -
1000 genomes newbie question
Hi all, total beginner here. I'm interested in obtaining phased sequences for a specific region (G6PD, say) from a bunch of individuals from African... -
1000 genomes
Hello everybody, Im new here... and would appreciate any help! Maybe its an obvious question but Im trying to find out how to interrogate the 1000 genomes...
