1000 genomes and depth of coverage

[lre1234]

Hi all,

I am interested in obtaining information regarding the depth of coverage for specific regions of the genome from the 1000 genomes data. I do not want to know overall depth of coverage across the genome from the sequencing. As an example, for a 10kb region on chromosome 10, what was the coverage across that specific region that the 1000 genomes samples got. Ideally, I would like to know this on an individual sample basis. I can't seem to find a way of doing this without actually downloading the sequence data itself, but that quite a bit of data and our machines would be able to handle it. Does any one have any thoughts?

[GenoMax]

See the example on how to do this without downloading all data at 1000 genomes site: http://www.1000genomes.org/category/...uestions/depth

[lre1234]

Thanks, I didn't see that function.... That helps.