Hello Everyone,
I am currently trying to assemble mammalian paired-end DNASeq files from Illumina using ABYSS. The problem is that ABYSS...
10 results in 0.0021 seconds.
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ABYSS never completes a run
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Error when running ABySS
I am working on a centOS release 6.6 Linux cluster.
I have Abyss and open mpi installed in my path:
...Code:$ which mpirun /c3se/apps/Glenn/openmpi/1.5.4/bin/mpirun
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What is the specific syntax needed for Trans-ABySS to analyze both SE and PE files?
I have been trying for days to get Trans-ABySS to run a set of paired-end and single-end fastq files. The paired in data is stored in two files, one with... -
abyss-pe Read File Error:
Hello,
I am trying to run abyss-pe but I get the following error:
0: Reading `../../GerRegGA/GerRegina_1_trimmed.fastq'...... -
Redirecting ABySS temp directory
Basically I am filling my temp directory whilst running ABySS and due to running on a server am unable to increase the size of my temp dir but would be... -
ABySS error
I am currently attempting to compare assemblers for use on my dataset and had set ABySS running on our cluster with the submission form :
... -
From Abyss to transAbyss
Hi! I'm new to multiKmer assembly.
I just ran a bunch of Abyss assemblies combining three different PE libraries (plus some se leftover after... -
Help with parallel transcriptome assembly.
Hello,
I am trying to assemble an insect (a leafhopper) transcriptome. The raw data is 372,756,990 reads, 150 bp in length. Previously,... -
Alternate contig scaffoldings with ABySS
Hi everybody,
I would like to know if anyone tried to scaffold contigs returned from ABYSS using several n (the minimum number of pairs needed... -
abyss-pe - no LIB-contigs.fa !!!
Hi all,
I'm new at using ABySS and when I ran the following command on ABySS v 1.2.7:
abyss-pe k=25 n=10 in=' /path/to/reads/file/1...Last edited by savkart; 07-30-2011, 05:40 AM.
