Hi everybody,
I would like to know if anyone tried to scaffold contigs returned from ABYSS using several n (the minimum number of pairs needed to consider joining two contigs) values, starting from the same dataset of contigs obtained with a certain k value. How should I run the abyss-pe script in order to start from ABYSS results (*-3.fa, lib.hist and lib.dist) and not to perform the assembly again?
I use Abyss 1.2.5. I run it on a Mac machine and encountered some difficulties in compiling 1.3.0.
Thanks to everybody
I would like to know if anyone tried to scaffold contigs returned from ABYSS using several n (the minimum number of pairs needed to consider joining two contigs) values, starting from the same dataset of contigs obtained with a certain k value. How should I run the abyss-pe script in order to start from ABYSS results (*-3.fa, lib.hist and lib.dist) and not to perform the assembly again?
I use Abyss 1.2.5. I run it on a Mac machine and encountered some difficulties in compiling 1.3.0.
Thanks to everybody