Hi,
I am trying to get CEGMA to run on our cluster. After the horrors of genewise installation I thought i had everything complete but now...
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Warning: CEGMA is broken under NCBI BLAST+ v2.2.30
The latest version of BLAST+ breaks the CEGMA program because it no longer supports a word size of 5 in TBLASTN. This may or may not be a bug: I can't... -
cegma genome_map error
Hi all,
I followed christoph installation log file for cegma 2.4 which is very well explained.
http://korflab.ucdavis.edu/dataset...Last edited by lilicano; 02-11-2015, 03:57 PM. -
Problem running CEGMA
Hi,
I have installed the following as prerequisites for CEGMA version 2.4:
hmmer-3.0
geneid v1.4
genewise... -
Alternatives to installing CEGMA yourself
There are many recent threads in which people have reported problems in trying to install and/or run CEGMA. I try to check on these and add comments as... -
running CEGMA VM
I used CEGMA VM on windows 7 Operating system. I used virtual box for VM and followed steps as in:http://korflab.ucdavis.edu/datasets/cegma/cegma_vm.... -
Trouble running CEGMA sample data
Hello,
I am installing cegma for the first time and I am having trouble running sample data. I googled it, I could not able to find a solution.... -
CEGMA with custom set of proteins
Hi there,
I am trying to use CEGMA with a custom set of alignment that I maintain, instead of the default KOGs. When running in a custom... -
Cegma faq
I've started a CEGMA FAQ (should have done this many years ago). I will try to keep it updated. -
Using CEGMA
Hello Guys,
I have a project task, and i need to implement CEGMA for validating the predicted genes in the de-novo assembly. i have... -
Problems with CEGMA dependency installation
Hi everyone,
I am having trouble installing wise2.2.3-rc7 for running CEGMA. This is the version that the authors of CEGMA recommend but I run... -
Getting wise2 to compile on RHEL
I'm trying to get genewise to complie on RHEL 6 and I'm getting the standard glib-config not found. I've changed the make file to reflect the glib-2.0... -
CEGMA error
Hi,
I've been trying to run CEGMA on my 280MB genome. It does run fine on all other genomes I've got, but it refuses to run on my genome....
