Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Alternatives to installing CEGMA yourself

    There are many recent threads in which people have reported problems in trying to install and/or run CEGMA. I try to check on these and add comments as time allows, but I thought it worth mentioning that there are many ways you can run CEGMA without having to install it manually.
    1. CEGMA packages are available for Homebrew, Linuxbrew, and LPM (thanks to Shaun Jackman and Masahiro Kasahara)
    2. There is a CEGMA iPlant application (thanks to Michael Crusoe)
    3. There is an Amazon Machine Instance (thanks to Matt MacManes)
    4. There is a CEGMA docker image (thanks to Rob Syme)
    5. And there is a Virtual Machine


    All our detailed on the CEGMA FAQ:

    However you install CEGMA, I strongly suggest that people first try running it with the included sample data before trying to get it to work with your own data.

  • #2
    The virtual machine works well!

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Advanced Tools Transforming the Field of Cytogenomics
      by seqadmin


      At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
      09-26-2023, 06:26 AM
    • seqadmin
      How RNA-Seq is Transforming Cancer Studies
      by seqadmin



      Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
      09-07-2023, 11:15 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 09-29-2023, 09:38 AM
    0 responses
    10 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-27-2023, 06:57 AM
    0 responses
    13 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-26-2023, 07:53 AM
    0 responses
    30 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-25-2023, 07:42 AM
    0 responses
    18 views
    0 likes
    Last Post seqadmin  
    Working...
    X