9 results in 0.0024 seconds.
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Retrieve genomic coordinates (locus start, locus end) from blastn hits?
Hi everyone, I'm trying to carry out some sort of reciprocal best hits analysis with blastn (so two-step process) in order to find orthologs (I know it... -
CrossMap analysis
I am trying to convert some genome coordinates of SNPs in one vcf file using the CrossMap program (http://crossmap.sourceforge.net/).
I... -
Comparing location of reads mapping to reference genome
Dear All
I have RNASeq reads of different length (50,100) mapped to the same reference genome. I need to determine if they map to the same... -
5' co-ordinate lower than 3' for negative strand ORF - Glimmer
I have used Glimmer to identify ORFs in my assembled bacterial contigs & after browsing through the .predict file found that the co-ordinates for... -
Annotate coordinates
Hi all
I am wondering if you know a way to determine if a set of chromosome coordinates (chr1:101598917;chr1:101598918;ect), lays in CDS, UTR,... -
How to fetch sequence from chromosome coordinates
Hi all
I have chromosome coordinates (e.g. 5233922 to 5235189 of chr18). how can I get the sequence corresponding to this region ?
Like... -
hg19 to Broad b37 coordinate conversion
Hi,
We'd like to convert hg19 coordinates to Broad's b37 reference coordinates. For example UCSC's "Known Genes" annotations can only... -
How to convert genome coordinates from two assemblies
Hi!
I’m working with two closely related species ( < 1 MY) and got a reference genome for both of them. I re-sequenced several individuals... -
BWA results without coordinates
Dear all,
I am a beginner and I'm starting to use BWA in a small resequencing project: one single gene, with a high coverage.
I...
