Hi friends,
I would like to annotate my de novo transcriptome assembly with KOG /COG database. I'm familar with doing local balstx against...
13 results in 0.0031 seconds.
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KOG functional annotation
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Protein sequence analysis
Hi,
I have a multiple protein sequence which looks like -
>gnl|TC-DB|198412035 1.A.70.1.3 PREDICTED: hypothetical protein... -
PAN and CORE genome analysis
Hi,
I have an OTU biom file (obtained from Closed reference QIIME 1.8.0 v) contains 65 samples, I am trying to do analysis for PAN/CORE genome.... -
Functional annotation
Hi everybody,
I am designing a novel pipeline for processing metagenomic datasets. I'd like to use for functional annotation the following... -
loading custom annotation on topgo
Hi,
I'm stuck on loading my customize annotation on topgo using R. I have a .txt file containing list of genes and their GO Ids.
... -
Functional annotation of OrthoMCL groups?
One of the cons of OrthoMCL is "OrthoMCL groups do not have function annotations". Could someone suggest me how to annotate the OrthoMCL gr... -
Assessing functional data in CummeRbund/cufflinks
Hello,
I am fairly new to the cummeRbund R-package and R.
For my research I would like to focus on functional properties between... -
Q:Accessing Functional data with CummeRbund from Cufflinks
Hello,
I am fairly new to the cummeRbund R-package and R.
For my research I would like to focus on functional properties between... -
Q:Accessing Functional data with CummeRbund from Cufflinks
Hello,
I would like to evaluate KOG_class differences with CummeRbund in the cufflinks output. A file gene_exp_func.diff was created that... -
Rice MicroArray Data
I have data from AffyMetrix Rice chips that were processed in Michigan. They already did some analysis for me so I have the original .CEL files but I... -
How many functionally-assigned reads is enough?
Hi,
We are analyzing some 454 results annotated by MG-RAST v2. We have 6 samples in each category, e.g. A1, A2,...,A6 for category A and...Last edited by idoerg; 04-25-2011, 10:47 AM. -
Function annotation
Dear colleagues,
I'm new in the forum and just begining to work with 454 FLX Titanium. Data processing seems to be complicated for me.... -
function/abundance prediction from reads
I've got a more general question. Many of the recent metagenomics studies deal with read lengths that complicate assembly or render it impossible. After...
