Hi,
I'm want to annotate a big, complex eukaryotic genome from non-model using GeneMark 4.69 gene prediction.
I want to train...
29 results in 0.0023 seconds.
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training GeneMark for gene prediction
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Why do some gene prediction tools represent the coding region in HMM with 6 states?
Some gene prediction tools such as FragGeneScan use a 6-periodic HMM (di-codon) to represent the coding region.
Why do these tools choose a 6-periodic...Last edited by Mia Blige; 05-09-2021, 08:24 AM. -
Glimmer HMM
Hi,
I usually do Gene Predictions(Oryza sativa) in online tools like GENSCAN, FGENESH, but my PI wanted me to search for... -
GeneMark-ES exits with "error, file not found: info/training.fna"
Dear All,
I am trying to use GeneMark-ES Suite 4.32 to predict genes from a fungal genome. But GeneMark exits with:
... -
[Basic question] why amino acids are used in machine learning for gene prediction
Dear all，
I'm a student who is interested in machine learning with gene prediction. I noticed that most papers would pick dimers... -
software for bacillus thuringiensis cry gene prediction
Hallo all iam new for NGS and bioinformatic, what kinds of tools to predict new cry gene, with input data is whole genone of bacillus thuringiensis?.... -
Gene Prediction: AUGUSTUS
Hello All,
I have sequenced and assembled the chloroplast genome of a red alga. I would like to use AUGUSTUS for gene prediction within... -
Tools to predict genes with RNA sequence
I have got a set of transcript sequence from RNA-seq in fasta. The referenced genome sequence is also known. Now I want to discover new genes from the... -
Is There Any Tools/Methods For PacBio IsoSeq New gene prediction analysis?
We have used the SMRT(Pacific Biosciences) sequencing system PacBio RS II to generate cDNA sequences. After isoform-level clustering, polishing and trimming... -
Question about --genemodel=complete option of Augustus
Hi all,
I am afraid I have a silly question but I am really confused.
I am now trying to construct a de novo gene model... -
Gene prediction from RNA-Seq assembly
Hi all,
I've seen in a few different places that gene prediction is included as part of an RNA-Seq assembly analysis framework. But, in...Last edited by bob-loblaw; 03-24-2015, 12:55 PM. -
Augustus output - how is the incompatible hint groups determined?
Hi, I have a question about the augustus (v3.0.2, v3.0.1) output - specifically when it reports the number of "hint groups fully obeyed" and... -
Prokaryotic gene prediction from Contigs
Dear All,
I have a multi-fasta file of millions of contigs of bacteria which I would like to run gene prediction on it. Which program do... -
Shortlisting genes from various gene prediction methods based on Blast results.
Hey Folks,
Background: I am trying to shortlist the list of genes predicted by different gene prediction methods. For this i am considering... -
how to select between genemark.hmm and genemarkS
Dear Group Members,
I am working on prokaryotic genome to predict genes. Neisseria meningitidis organism.
Input file is multi contig fasta...Last edited by bio_informatics; 02-06-2014, 11:04 PM.
