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  • mhadidi2002
    Member
    • Jun 2011
    • 24
    #1

    Prokaryotic gene prediction from Contigs

    Dear All,

    I have a multi-fasta file of millions of contigs of bacteria which I would like to run gene prediction on it. Which program do you recommend. I would like to get the output in fasta format..

    Thanks in advance,
    Mohamed
    Tags: gene prediction
    • TiborNagy
      Senior Member
      • Mar 2010
      • 329
      #2
      I have used RAST server to annotate bacterial sequences.

        Comment

        • maubp
          Peter (Biopython etc)
          • Jul 2009
          • 1544
          #3
          Millions on contigs, for one bacteria

          I would try Prokka http://www.vicbioinformatics.com/software.prokka.shtml

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