Since NCBI change a policy (HTTP to HTTPS) in using SRA data, HISAT2 was updated to version 2.0.5. I have HISAT2 2.0.1 installed with homebrew.
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31 results in 0.0029 seconds.
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GBrowse not recognizing the kent source tree
Hi all,
When I'm installing GBrowse I'm experiencing some problems. When it comes to the point of running ./Build installdeps to fix the...Last edited by Macspider; 07-11-2016, 06:07 AM. -
MAKER prerequisites and dependencies
Hello all,
I'm a biologist trying to be a bioinformatician, and I'm doing a local installation of MAKER on my own, which requires a bunch... -
Maq Installation Fail
Hello,
I've been trying to install Maq onto a 64bit linux system. I've looked at the other threads that have had problems with Maq but nothing... -
tophat installation help, beginner
Hi I'm hoping someone can help me trouble shoot this.
I installed bowtie, samtool, boost and tophat as suggested on http://ccb.jhu.ed... -
Bowtie Troubles
I'm a Linux/command line novice having trouble getting bowtie to work at all. I've downloaded bowtie2-2.2.3-linux-x86_64.zip (26.4 MB) from sourceforge.... -
Mitobim-Any one used?- iteration problem
I am trying to use MITObim for mitchondrial genome assembly project. I have tried tutorial provided in MITObim:https://github.com/chrishah/MITObim... -
Creating Count Table using BedTools2 (which "executables" do I add to PATH?)
As you may guess by the title, I am not very experienced with Linux. I have been trying to follow the advice on these websites:
https:... -
SamTools installation in Ubuntu
Hi
I am trying to compile SamTools on Ubuntu 13.01 ( dual boot on macbook pro). But when I am trying to run "make" its throwing me the... -
Linux Mint: Not playing nice with bioconductor/edgeR. Why?
I am running Linux Mint (a variant of Ubuntu basically). I get the following warning messages:
...Code:> source("http://bioconductor.org/biocLite.R") -
Trouble installing htseq-count
I tried to install htseq-count on CentOS 5.9. I am getting errors:
...Code:[root@cltnfs HTSeq-0.5.4p3]# python setup.py build /usr/lib64/python2.4/distutils/dist.py:236:
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Warning messages in software during installing library package
Dear users,
I am trying to install cummeRbund library in my R latest version 3
i tried giving
source("http://bioconductor.org/biocLite.R")... -
Problem installing ARACHNEof Broad Institute
Hi everyone,
I have been trying to install Arachne in Ubuntu 13.04 with no succes. I have gcc version 4.7.3 and this is what I did:...Last edited by aurora.labastida; 08-01-2013, 02:09 PM. -
R installation Problem
Dear Users,
I am trying to install R package(R-3.0.1) in my Linux Machine Redhat(6.0)
After unzip and giving command ./configure..... -
samtools compiling issues on Solaris 11
Hi all,
I'm quite new to the field and I'm having issues compiling samtools 0.1.19 from source. I'm using a SunOs Solaris 11 platform...
